C. elegans Data Release Report for 8/3-8/9, 2009
This week we’ve released 24 C. elegans data sets:
Lieb – 7 ChIP-chip data sets
Waterston – 17 RNA tiling array data sets
on the following kinds of samples:
antibodies: dpy-27, no antibody control, rna polii ctd domain unphosophorylated, sdc-2, sdc-3, trimethylated lys-9 on histone h3
stages: blastula embryo, elongating embryo, embryo, enclosing embryo, fully-elongated embryo, gastrulating embryo, l1 larva, l2 larva, l3 larva, l4 larva, l4 larva male, late cleavage stage embryo, newly molted young adult hermaphrodite
strains: 11dh, CB4689, JK1107, N2, YPT41, YPT47
tissues: hermaphrodite gonad, whole organism
Here’s the breakdown by project:
Lieb Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| chromatin binding site (GFF) signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: N2 Stages: embryo Antibodies: SDC-2, SDC-2 Embargoed until 9 months from 2009-06-17 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF) signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: N2 Stages: embryo Antibodies: RNA polII CTD domain unphosophorylated Embargoed until 9 months from 2009-06-26 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF) signal data W(G) | ChIP-chip | Tissues: whole organism Strains: N2 Stages: embryo Antibodies: Trimethylated Lys-9 on histone H3 Embargoed until 9 months from 2009-07-06 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF) signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: 11dh Stages: embryo Antibodies: DPY-27, No Antibody Control Embargoed until 9 months from 2009-07-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF) signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: YPT41 Stages: embryo Antibodies: DPY-27, No Antibody Control Embargoed until 9 months from 2009-07-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF) signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: YPT47 Stages: embryo Antibodies: DPY-27, No Antibody Control Embargoed until 9 months from 2009-07-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF) signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: YPT47 Stages: embryo Antibodies: SDC-3, No Antibody Control Embargoed until 9 months from 2009-07-10 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
Waterston Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: L2 larva Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: L4 larva Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: L3 larva Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: newly molted young adult hermaphrodite Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: blastula embryo, gastrulating embryo Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: L2 larva Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: CB4689 (him-8), N2 Stages: L4 larva male Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: elongating embryo, enclosing embryo, fully-elongated embryo, late cleavage stage embryo Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism, hermaphrodite gonad Strains: N2 Stages: newly molted young adult hermaphrodite Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: L1 larva Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: JK1107 (gonad-less) Stages: L4 larva Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… developmental time course |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: newly molted young adult hermaphrodite Pathogen: P. luminscens, 24h Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… pathogen set |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: newly molted young adult hermaphrodite Pathogen: E. faecalis, 48h Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… pathogen set |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: newly molted young adult hermaphrodite Pathogen: S. marcescans, 48h Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… pathogen set |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: newly molted young adult hermaphrodite Pathogen: S. marcescans, 24h Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… pathogen set |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: newly molted young adult hermaphrodite Pathogen: OP50, 48h (control) Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… pathogen set |
| transcriptional signal (WIG), transcriptional fragments (GFF) | RNA tiling array | Tissues: whole organism Strains: N2 Stages: newly molted young adult hermaphrodite Pathogen: OP50, 24h (control) Embargoed until 9 months from 2009-03-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… pathogen set |
Categories: Worm Data Release C. elegans, ChIP-chip, developmental stage, Lieb, pathogen exposure, tiling array, tissue, Waterston