C. elegans Data Release Report for 5/25-5/31, 2009
This week we’ve released 8 C. elegans data sets:
Lieb – 3 ChIP-chip data sets
Snyder – 5 ChIP-seq data sets
on the following kinds of samples:
antibodies: ama-1, dpy-27, mab-5, pha-4, sdc-3, RNA Polymerase II
stages: embryo, l3 larva, l4 larva, l4-adult molt, newly molted young adult hermaphrodite
strains: N2, OP26, OP34, OP37
tissue: whole organism
Here’s the breakdown by project:
Lieb Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| chromatin binding signal (WIG), chromatin binding peaks (GFF) | ChIP-chip | Tissues: whole organism Strains: N2 Stages: embryo Antibodies: SDC-3 Embargoed until 9 months from 2009-05-05 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site signal (WIG), chromatin binding peaks (GFF) | ChIP-chip | Tissues: whole organism Strains: N2 Stages: embryo Antibodies: SDC-3 Embargoed until 9 months from 2009-05-06 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site signal (WIG), chromatin binding peaks (GFF) | ChIP-chip | Tissues: whole organism Strains: N2 Stages: embryo Antibodies: DPY-27 Embargoed until 9 months from 2009-05-07 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
Snyder Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| chromatin binding site signal (WIG), chromatin binding peaks (GFF) | ChIP-seq | Tissues: whole organism Strains: OP37 Stages: embryo Antibodies: pha-4 (via anti-GFP) Embargoed until 9 months from 2009-05-27 |
ChadoXML | Tracks | Stanza | Raw Data | details…
unc-119(ed3) III; wgIs37 [unc-119(+) pha-4::TY1::EGFP::3xFLAG] |
| chromatin binding site signal (WIG), chromatin binding peaks (GFF) | ChIP-seq | Tissues: whole organism Strains: OP34 Stages: L4 larva, L4-adult molt, newly molted young adult hermaphrodite Antibodies: ama-1 (via anti-GFP) Embargoed until 9 months from 2009-05-27 |
ChadoXML | Tracks | Stanza | Raw Data | details…
unc-119(ed3) III; wgIs34 [unc-119(+) ama-1::TY1::EGFP::3xFLAG] |
| chromatin binding site signal (WIG), chromatin binding peaks (GFF) | ChIP-seq | Tissues: whole organism Strains: OP34 Stages: L4 larva, L4-adult molt, newly molted young adult hermaphrodite Antibodies: RNA Polymerase II Embargoed until 9 months from 2009-05-27 |
ChadoXML | Tracks | Stanza | Raw Data | details…
unc-119(ed3) III; wgIs34 [unc-119(+) ama-1::TY1::EGFP::3xFLAG] |
| chromatin binding site signal (WIG), chromatin binding peaks (GFF) | ChIP-seq | Tissues: whole organism Strains: OP26 Stages: L3 larva Antibodies: mab-5 (via anti-GFP) Embargoed until 9 months from 2009-05-27 |
ChadoXML | Tracks | Stanza | Raw Data | details…
unc-119(ed3) III; wgIs26 [unc-119(+) mab-5::TY1::EGFP::3xFLAG] |
| chromatin binding site signal (WIG), chromatin binding peaks (GFF) | ChIP-seq | Tissues: whole organism Strains: OP26 Stages: L3 larva Antibodies: RNA Polymerase II Embargoed until 9 months from 2009-05-27 |
ChadoXML | Tracks | Stanza | Raw Data | details…
unc-119(ed3) III; wgIs26 [unc-119(+) mab-5::TY1::EGFP::3xFLAG] |