modENCODE Blog

modMine release 15

New full release with 770 submissions. 568 concern fly, 202 worm.

This release contains a snapshot of all fly and worm data for analysis (data analysis freeze).

Please note that the submissions for fly of the Henikoff group have been updated respect release 14. The update has increased the number of submissions by 8.

This week we’ve released 24 C. elegans data sets:
Lieb – 7 ChIP-chip data sets
Waterston – 17 RNA tiling array data sets
on the following kinds of samples:
antibodies: dpy-27, no antibody control, rna polii ctd domain unphosophorylated, sdc-2, sdc-3, trimethylated lys-9 on histone h3
stages: blastula embryo, elongating embryo, embryo, enclosing embryo, fully-elongated embryo, gastrulating embryo, l1 larva, l2 larva, l3 larva, l4 larva, l4 larva male, late cleavage stage embryo, newly molted young adult hermaphrodite
strains: 11dh, CB4689, JK1107, N2, YPT41, YPT47
tissues: hermaphrodite gonad, whole organism
Read more…

This week we’ve released 2 C. elegans data sets:
Lieb – 2 ChIP-chip data sets
on the following kinds of samples:
antibodies: dpy-27, no antibody control, rna polii ctd domain unphosophorylated
stage: l4 larva
strain: N2
tissue: whole organism
Read more…

This week we’ve released 7 C. elegans data sets:
Waterston – 7 RNA-seq data sets
on the following kinds of samples:

stages: adult male, embryo, l1 larva, l2 larva, l3 larva, l4 larva, newly molted young adult hermaphrodite
strains: CB4689, N2
tissue: whole organism

Read more…

This week we’ve released 4 C. elegans data sets:
Lieb – 4 ChIP-chip data sets
on the following kinds of samples:

antibodys: dpy-27, htz-1, no antibody control, rna polii ctd domain unphosophorylated, sdc-3
stage: embryo
strain: N2
tissue: whole organism

Read more…

This week we’ve released 7 C. elegans data sets:
Snyder – 7 ChIP-seq data sets
on the following kinds of samples:

antibodys: daf-16, pha-4, RNA pol II
stages: embryo, l1 larva, l4 larva, l4-adult molt, newly molted young adult hermaphrodite
strains: OP37, TJ356
tissue: whole organism
Read more…

This week we’ve released 8 C. elegans data sets:
Lieb – 3 ChIP-chip data sets
Snyder – 5 ChIP-seq data sets
on the following kinds of samples:

antibodies: ama-1, dpy-27, mab-5, pha-4, sdc-3, RNA Polymerase II
stages: embryo, l3 larva, l4 larva, l4-adult molt, newly molted young adult hermaphrodite
strains: N2, OP26, OP34, OP37
tissue: whole organism

Read more…

This week we’ve released 1 C. elegans data sets:
Piano – 1 RACE, Computational annotation data sets
on the following kinds of samples:
stages: adult, embryo, l1 larva, l2 larva, l3 larva, l4 larva
strain: N2
tissue: whole organism
Read more…

This week we’ve released 1 C. elegans data sets:
Lieb – 1 ChIP-chip data sets
on the following kinds of samples:

antibody: no antibody control
stage: embryo
strain: SS0881
tissue: whole organism

Read more…

This week we’ve released 1 C. elegans data sets:
Lieb – 1 ChIP-chip data sets
on the following kinds of samples:
antibody: sdc-2
stage: embryo
strain: N2
tissue: whole organism
Read more…