D. melanogaster Data Release Report for 7/27-8/2, 2009
This week we’ve released 21 D. melanogaster data sets:
Lai – 1 RNA-seq (small RNAs) data sets
White – 20 ChIP-chip data sets
on the following kinds of samples:
antibodies: h3k27me3, h3k4me1, h3k4me3, h3k9ac, h3k9me3, no antibody control
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 15, embryonic stage 16, embryonic stage 17, embryonic stage 9, first instar larval stage, second instar larval stage
strains: Canton-S, y; cn bw sp
tissues: adult head, whole organism
Here’s the breakdown by project:
Lai Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments (SAM) | RNA-seq (small RNAs) | Tissues: whole organism, adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs captured, single read alignments, repeat regions not masked (some sequences align to more than 1 genomic location) |
White Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K27me3, No Antibody Control Embargoed until 9 months from 2009-03-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K27me3, No Antibody Control Embargoed until 9 months from 2009-03-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K9me3, No Antibody Control Embargoed until 9 months from 2009-03-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: second instar larval stage Antibodies: H3K9me3, No Antibody Control Embargoed until 9 months from 2009-03-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K27me3, No Antibody Control Embargoed until 9 months from 2009-03-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K9me3, No Antibody Control Embargoed until 9 months from 2009-03-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: second instar larval stage Antibodies: H3K9Ac, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: second instar larval stage Antibodies: H3K4me3, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K9Ac, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 9 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K9Ac, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K4me3, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K4me3, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), signal data (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
Categories: Fly Data Release ChIP-chip, chromatin binding sites, developmental stage, Lai, RNA-Seq, small RNAs, tissue, White