D. melanogaster Data Release Report for 3/2-3/8, 2009
This week we’ve released 10 D. melanogaster data sets:
Celniker – 3 Computational annotation and 4 RNA tiling array data sets
Lai – 3 RNA-seq data sets
on the following kinds of samples:
stages: adult stage, embryonic stage, embryonic stage 11, embryonic stage 12, embryonic stage 17, late extended germ band stage, third instar larval stage
strains: Canton-S, y; cn bw sp
tissues: abdomen, adult head, thorax, whole organism
Here’s the breakdown by project:
Celniker Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| gene models (GFF) | Computational annotation | Embargoed until 9 months from 2008-03-27 | ChadoXML | Tracks | Stanza | Raw Data | details… |
| gene models (GFF) | Computational annotation | Embargoed until 9 months from 2008-04-23 | ChadoXML | Tracks | Stanza | Raw Data | details… |
| gene models (GFF) | Computational annotation | Embargoed until 9 months from 2008-06-26 | ChadoXML | Tracks | Stanza | Raw Data | details… |
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage Embargoed until 9 months from 2008-09-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage Embargoed until 9 months from 2008-09-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage, embryonic stage 17 Embargoed until 9 months from 2008-09-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 11, embryonic stage 12, late extended germ band stage Embargoed until 9 months from 2008-09-23 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
Lai Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments (SAM) | RNA-seq | Tissues: adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details…
small RNAs, single read alignments, no repeat masking, sequence may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: abdomen, thorax Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details…
small RNAs, single read alignments, no repeat masking, sequence may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: third instar larval stage Embargoed until 9 months from 2008-10-09 |
ChadoXML | Tracks | Stanza | Raw Data | details…
small RNAs, single read alignments, no repeat masking, sequence may align to >>1 genomic location |