D. melanogaster Data Release Report for 3/23-3/29, 2009
This week we’ve released 2 D. melanogaster data sets:
Celniker – 1 RTPCR data sets
Lai – 1 (small RNA) RNA-seq data sets
on the following kinds of samples:
cell line: CME L1
stages: pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage
strain: Canton-S
tissues: ventral prothoracic disc, whole organism
Here’s the breakdown by project:
Celniker Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| trace reads, gene models, EST alignments (GFF) | RTPCR | Tissues: ventral prothoracic disc Lines: CME L1 Stages: third instar larval stage Embargoed until 9 months from 2009-02-27 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
This week we’ve released 2 <i>D. melanogaster</i> data sets:
Celniker – 1 RTPCR data sets
Lai – 1 RNA-seq data sets
on the following kinds of samples:<br />
<b>cell line</b>: CME L1<br />
<b>stages</b>: pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage<br />
<b>strain</b>: Canton-S<br />
<b>tissues</b>: ventral prothoracic disc, whole organism<br />
Celniker – 1 RTPCR data sets
Lai – 1 RNA-seq data sets
on the following kinds of samples:<br />
<b>cell line</b>: CME L1<br />
<b>stages</b>: pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage<br />
<b>strain</b>: Canton-S<br />
<b>tissues</b>: ventral prothoracic disc, whole organism<br />
Lai Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: pharate adult stage P10, pharate adult stage P11, pharate adult stage P12, pharate adult stage P13, pharate adult stage P14, pharate adult stage P15, and 3 more… Embargoed until 9 months from 2008-10-09 |
ChadoXML | Tracks | Stanza | Raw Data | details…
small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
Categories: Fly Data Release cell line, Celniker, developmental stage, drosophila, Lai, RNA-Seq, RTPCR, small RNAs