D. melanogaster Data Release Report for 3/30-4/5, 2009
This week we’ve released 6 D. melanogaster data sets:
Lai – 6 RNA-seq data sets
on the following kinds of samples:
cell line: Kc167
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage, pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, thorax, whole organism
Here’s the breakdown by project:
Lai Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments (SAM) | RNA-seq | Tissues: embryo-derived cell-line Lines: Kc167 Stages: late embryonic stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism, abdomen, thorax Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: third instar larval stage Embargoed until 9 months from 2008-10-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: embryonic stage 10, embryonic stage 11, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, and 3 more… Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: embryonic stage 11, embryonic stage 12, embryonic stage 13 Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: pharate adult stage P10, pharate adult stage P11, pharate adult stage P12, pharate adult stage P13, pharate adult stage P14, pharate adult stage P15, and 3 more… Embargoed until 9 months from 2008-10-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
Categories: Fly Data Release cell line, developmental stage, drosophila, Lai, RNA-Seq, small RNAs, tissue