D. melanogaster Data Release Report for 4/6-4/12, 2009
This week we’ve released 8 D. melanogaster data sets:
Karpen – 1 ChIP-chip data sets
Lai – 4 RNA-seq data sets
White – 3 ChIP-chip data sets
on the following kinds of samples:
antibodies: h3k27me3, h4actetra
cell line: S2-DRSC
stages: adult stage, embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 15, embryonic stage 16, embryonic stage 2, embryonic stage 9, late embryonic stage
strains: Canton-S, y; cn bw sp
tissues: adult head, embryo-derived cell-line, whole organism
Here’s the breakdown by project:
Karpen Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| chromatin binding site (GFF), chromatin binding signal (WIG) | ChIP-chip | Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Antibodies: H4AcTetra Embargoed until 9 months from 2008-08-15 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
Lai Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments (SAM) | RNA-seq | Tissues: whole organism, adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-10-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| alignments (SAM) | RNA-seq | Tissues: whole organism, adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-10-09 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: embryonic stage 11, embryonic stage 12, embryonic stage 13 Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: embryonic stage 1, embryonic stage 2 Embargoed until 9 months from 2008-09-22 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location |
White Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| chromatin binding site (GFF), chromatin binding signal (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K27me3 Embargoed until 9 months from 2009-03-03 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), chromatin binding signal (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K27me3 Embargoed until 9 months from 2009-03-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| chromatin binding site (GFF), chromatin binding signal (WIG) | ChIP-chip | Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 9 Antibodies: H3K27me3 Embargoed until 9 months from 2009-02-02 |
ChadoXML | Tracks | Stanza | Raw Data | details… |