D. melanogaster Data Release Report for 5/25-5/31, 2009
This week we’ve released 11 D. melanogaster data sets:
Celniker – 1 Computational annotation and 6 RNA sample creation and 3 RNA tiling array data sets
Karpen – 1 ChIP-chip data sets
on the following kinds of samples:
antibody: h3k27ac
cell lines: 1182-4H, CME L1, CME W1 Cl.8+, CME W2, G2, GM2, Kc167, ML-DmBG1-c1, ML-DmBG2-c2, ML-DmBG3-c2, ML-DmD11, ML-DmD16-c3, ML-DmD17-c3, ML-DmD20-c2, ML-DmD20-c5, ML-DmD21, ML-DmD23-c4, ML-DmD32, ML-DmD4-c1, ML-DmD8, ML-DmD9, S1, S2-DRSC, S2R+, S3, Sg4, mbn2
stages: adult stage, cleavage stage, dorsal closure stage, early extended germ band stage, egg stage, embryonic stage, embryonic stage 1, larval stage, late embryonic stage, third instar larval stage
strains: Oregon-R-modENCODE, y; cn bw sp
tissues: antenna disc-derived cell-line, blastoderm cell, cns-derived cell-line, dorsal mesothoracic disc, early embryonic cell, embryo-derived cell-line, embryonic/larval hemocyte, eye-antenna disc-derived cell-line, gastrula cell, imaginal disc-derived cell-line, ventral prothoracic disc, whole organism
Here’s the breakdown by project:
Celniker Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| gene models (GFF) | Computational annotation | Embargoed until 9 months from 2009-04-21 | ChadoXML | Tracks | Stanza | Raw Data | details… |
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: whole organism Strains: y; cn bw sp Stages: larval stage, third instar larval stage Embargoed until 9 months from 2009-04-29 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: whole organism Strains: y; cn bw sp Stages: larval stage Embargoed until 9 months from 2009-04-29 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: whole organism Strains: y; cn bw sp Stages: larval stage Embargoed until 9 months from 2009-04-29 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| metadata only (chadoxml) | RNA sample creation | Tissues: embryo-derived cell-line, dorsal mesothoracic disc, CNS-derived cell-line Lines: Kc167, S2-DRSC, CME W1 Cl.8+, ML-DmBG3-c2 Stages: late embryonic stage, third instar larval stage Embargoed until 9 months from 2009-04-23 |
ChadoXML | Tracks | Stanza | Raw Data | details…
these metadata to be referenced in future submissions |
| metadata only (chadoxml) | RNA sample creation | Tissues: embryo-derived cell-line, embryonic/larval hemocyte, dorsal mesothoracic disc, ventral prothoracic disc, CNS-derived cell-line, imaginal disc-derived cell-line, eye-antenna disc-derived cell-line, antenna disc-derived cell-line
Lines: Kc167, GM2, S2-DRSC, S2R+, S1, 1182-4H, mbn2, ML-DmD21, CME W1 Cl.8+, ML-DmD9, CME L1, G2, S3, ML-DmD23-c4, ML-DmBG1-c1, ML-DmBG3-c2, ML-DmD16-c3, ML-DmD4-c1, ML-DmD32, ML-DmD11, ML-DmD20-c2, ML-DmD20-c5, ML-DmD17-c3, Sg4, ML-DmD8, CME W2, ML-DmBG2-c2 Stages: late embryonic stage, third instar larval stage Embargoed until 9 months from 2009-05-05 |
ChadoXML | Tracks | Stanza | Raw Data | details…
these metadata to be referenced in future submissions |
| metadata only (chadoxml) | RNA sample creation | Tissues: embryo-derived cell-line, CNS-derived cell-line, dorsal mesothoracic disc Lines: Kc167, S2-DRSC, ML-DmBG3-c2, CME W1 Cl.8+ Stages: late embryonic stage, third instar larval stage Embargoed until 9 months from 2009-05-05 |
ChadoXML | Tracks | Stanza | Raw Data | details…
these metadata to be referenced in future submissions |
| metadata only (chadoxml) | RNA sample creation | Tissues: embryo-derived cell-line, CNS-derived cell-line, dorsal mesothoracic disc Lines: G2, Kc167, S2-DRSC, ML-DmBG3-c2, CME W1 Cl.8+ Stages: late embryonic stage, third instar larval stage Embargoed until 9 months from 2009-05-05 |
ChadoXML | Tracks | Stanza | Raw Data | details…
these metadata to be referenced in future submissions |
| metadata only (chadoxml) | RNA sample creation | Tissues: whole organism Strains: Oregon-R-modENCODE, y; cn bw sp Stages: adult stage, cleavage stage, dorsal closure stage, early extended germ band stage, egg stage, embryonic stage, and 39 more… Embargoed until 9 months from 2009-05-06 |
ChadoXML | Tracks | Stanza | Raw Data | details…
these metadata to be referenced in future submissions |
| metadata only (chadoxml) | RNA sample creation | Tissues: whole organism, early embryonic cell, blastoderm cell, gastrula cell Strains: y; cn bw sp Stages: cleavage stage, dorsal closure stage, early extended germ band stage, egg stage, embryonic stage, embryonic stage 1, and 22 more… Embargoed until 9 months from 2009-05-06 |
ChadoXML | Tracks | Stanza | Raw Data | details…
these metadata to be referenced in future submissions |
Karpen Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| chromatin binding signal (WIG), chromatin binding sites (GFF) | ChIP-chip | Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Antibodies: H3K27ac Embargoed until 9 months from 2009-02-12 |
ChadoXML | Tracks | Stanza | Raw Data | details… |