D. melanogaster Data Release Report for 6/15-6/21, 2009
This week we’ve released 3 D. melanogaster data sets:
Henikoff – 1 RNA tiling array data sets
Lai – 2 RNA-seq data sets
on the following kinds of samples:
cell lines: S2, S2-DRSC
stages: adult stage, late embryonic stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, imaginal disc, thorax, whole organism
Here’s the breakdown by project:
Henikoff Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| transcriptional fragments (GFF), transcriptional signals (WIG) | RNA tiling array | Tissues: embryo-derived cell-line Lines: S2, S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2009-06-08 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
Lai Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments (SAM) | RNA-seq | Tissues: whole organism, imaginal disc Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details…
small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism, abdomen, thorax Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details…
small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location |