D. melanogaster Data Release Report for 6/8-6/14, 2009
This week we’ve released 3 D. melanogaster data sets:
Lai – 3 RNA-seq data sets
on the following kinds of samples:
cell lines: Kc167, S2-DRSC
stages: embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 2, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage
strains: Canton-S, Oregon-R-modENCODE
tissues: embryo-derived cell-line, whole organism
Here’s the breakdown by project:
Lai Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: embryonic stage 10, embryonic stage 11, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, and 3 more… Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: embryo-derived cell-line Strains: Oregon-R-modENCODE Lines: Kc167, S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: Canton-S Stages: embryonic stage 1, embryonic stage 2 Embargoed until 9 months from 2008-09-19 |
ChadoXML | Tracks | Stanza | Raw Data | details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location |