D. melanogaster Data Release Report for 7/13-7/19, 2009
This week we’ve released 8 D. melanogaster data sets:
Celniker – 4 RNA-seq data sets
MacAlpine – 3 ChIP-chip and 1 RNA tiling array data sets
on the following kinds of samples:
cell lines: CME W1 Cl.8+, Kc167, ML-DmBG3-c2, S2-DRSC
stages: adult stage, cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, late embryonic stage, third instar larval stage
strain: y; cn bw sp
tissues: cns-derived cell-line, dorsal mesothoracic disc, embryo-derived cell-line, larval salivary gland, whole organism
Here’s the breakdown by project:
Celniker Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| alignments (SAM) | RNA-seq | Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2009-06-22 |
ChadoXML | Tracks | Stanza | Raw Data | details… paired-end sequencing with alignments to splice junctions |
| alignments (SAM) | RNA-seq | Tissues: CNS-derived cell-line Lines: ML-DmBG3-c2 Stages: third instar larval stage Embargoed until 9 months from 2009-06-22 |
ChadoXML | Tracks | Stanza | Raw Data | details… paired-end sequencing with alignments to splice junctions |
| alignments (SAM) | RNA-seq | Tissues: dorsal mesothoracic disc Lines: CME W1 Cl.8+ Stages: third instar larval stage Embargoed until 9 months from 2009-06-22 |
ChadoXML | Tracks | Stanza | Raw Data | details… paired-end sequencing with alignments to splice junctions |
| alignments (SAM) | RNA-seq | Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Embargoed until 9 months from 2009-07-14 |
ChadoXML | Tracks | Stanza | Raw Data | details… single reads with alignments to splice junctions |
MacAlpine Project
| Data Type | Experiment type | Details | Links | Comments |
|---|---|---|---|---|
| origins of replication (GFF), signal data (WIG) | tiling array | Tissues: embryo-derived cell-line Lines: Kc167 Stages: late embryonic stage Embargoed until 9 months from 2009-07-13 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| origins of replication (GFF), signal data (WIG) | tiling array | Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2009-07-13 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| origins of replication (GFF), signal data (WIG) | tiling array | Tissues: CNS-derived cell-line Lines: ML-DmBG3-c2 Stages: third instar larval stage Embargoed until 9 months from 2009-07-13 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
| copy number variation (GFF), signal data (WIG) | CGH | Tissues: larval salivary gland Strains: y; cn bw sp Stages: cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, and 8 more… Embargoed until 9 months from 2009-07-17 |
ChadoXML | Tracks | Stanza | Raw Data | details… |
Categories: Fly Data Release cell line, Celniker, CGH, copy number variation, developmental stage, drosophila, MacAlpine, RNA-Seq, tiling array, tissue