modMine release 21
Release 21 of modMine contains the same data of release 20, with the addition of the data concerning the hierarchical view of the Drosophila Regulatory Network (see “Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE”, 2010, Science 330: 1787-1797).
New in this release:
- Network displayer for the Drosophila Regulatory Network, where you explore the network and access reports on all the genes involved.
- An improved front page.
These two tables provide estimated expression levels for annotated genes and exons, using signals from Affymetrix Drosophila tiling arrays. The arrays were hybridized with total RNAs extracted from 25 cell lines and 30 developmental stages.
For more information, please see http://www.modencode.org/docs/flyscores.
The tables were compiled by the Bloomington group in the fly transcriptome project of modENCODE (Celniker, PI).
New documentation on the use of modMine is now available from the drop down menu of our blog.
Under the tag modMine you can find a general overview followed by an introductory video and a general help page with more detailed subsections devoted to the analysis of fly and worm data.