D. melanogaster Data Release Report for 7/20-7/26, 2009

nicole — Mon, 27 Jul 2009 20:50:23 +0000

This week we’ve released 5 D. melanogaster data sets:
MacAlpine – 4 RNA tiling array data sets
White – 1 ChIP-chip data sets
on the following kinds of samples:
antibodys: h3k27me3, no antibody control
cell line: S2-DRSC
stages: cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, third instar larval stage
strains: Oregon-R-modENCODE, Oregon-R_Orr-Weaver, w[1118], y; cn bw sp
tissues: embryo-derived cell-line, larval salivary gland, oocyte associated follicle cell, whole organism

Here’s the breakdown by project:

MacAlpine Project

Data Type	Experiment type	Details	Links	Comments
signal data (WIG)	CGH	Tissues: embryo-derived cell-line, whole organism Strains: w[1118] Lines: S2-DRSC Stages: cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, and 9 more… Embargoed until 9 months from 2009-07-20	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
copy number variation (GFF), signal data (WIG)	CGH	Tissues: oocyte associated follicle cell, whole organism Strains: Oregon-R_Orr-Weaver Stages: cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, and 8 more… Embargoed until 9 months from 2009-07-20	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
copy number variation (GFF), signal data (WIG)	CGH	Tissues: larval salivary gland, whole organism Strains: Oregon-R_Orr-Weaver Stages: cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, and 8 more… Embargoed until 9 months from 2009-07-20	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
copy number variation (GFF), signal data (WIG)	CGH	Tissues: oocyte associated follicle cell Strains: Oregon-R-modENCODE Stages: cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, and 8 more… Embargoed until 9 months from 2009-07-20	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

White Project

Data Type	Experiment type	Details	Links	Comments
chromatin binding peaks (GFF), chromatin binding signal (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: third instar larval stage Antibodies: H3K27me3, No Antibody Control Embargoed until 9 months from 2009-03-06	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

D. melanogaster Data Release Report for 7/13-7/19, 2009

nicole — Mon, 20 Jul 2009 20:26:06 +0000

This week we’ve released 8 D. melanogaster data sets:
Celniker – 4 RNA-seq data sets
MacAlpine – 3 ChIP-chip and 1 RNA tiling array data sets
on the following kinds of samples:
cell lines: CME W1 Cl.8+, Kc167, ML-DmBG3-c2, S2-DRSC
stages: adult stage, cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, late embryonic stage, third instar larval stage
strain: y; cn bw sp
tissues: cns-derived cell-line, dorsal mesothoracic disc, embryo-derived cell-line, larval salivary gland, whole organism

Here’s the breakdown by project:

Celniker Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2009-06-22	ChadoXML \| Tracks \| Stanza \| Raw Data	details… paired-end sequencing with alignments to splice junctions
alignments (SAM)	RNA-seq	Tissues: CNS-derived cell-line Lines: ML-DmBG3-c2 Stages: third instar larval stage Embargoed until 9 months from 2009-06-22	ChadoXML \| Tracks \| Stanza \| Raw Data	details… paired-end sequencing with alignments to splice junctions
alignments (SAM)	RNA-seq	Tissues: dorsal mesothoracic disc Lines: CME W1 Cl.8+ Stages: third instar larval stage Embargoed until 9 months from 2009-06-22	ChadoXML \| Tracks \| Stanza \| Raw Data	details… paired-end sequencing with alignments to splice junctions
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Embargoed until 9 months from 2009-07-14	ChadoXML \| Tracks \| Stanza \| Raw Data	details… single reads with alignments to splice junctions

MacAlpine Project

Data Type	Experiment type	Details	Links	Comments
origins of replication (GFF), signal data (WIG)	tiling array	Tissues: embryo-derived cell-line Lines: Kc167 Stages: late embryonic stage Embargoed until 9 months from 2009-07-13	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
origins of replication (GFF), signal data (WIG)	tiling array	Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2009-07-13	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
origins of replication (GFF), signal data (WIG)	tiling array	Tissues: CNS-derived cell-line Lines: ML-DmBG3-c2 Stages: third instar larval stage Embargoed until 9 months from 2009-07-13	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
copy number variation (GFF), signal data (WIG)	CGH	Tissues: larval salivary gland Strains: y; cn bw sp Stages: cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, and 8 more… Embargoed until 9 months from 2009-07-17	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

modENCODE Blog » copy number variation

D. melanogaster Data Release Report for 7/20-7/26, 2009

MacAlpine Project

White Project

D. melanogaster Data Release Report for 7/13-7/19, 2009

Celniker Project

MacAlpine Project