modENCODE Blog

This week we’ve released 1 D. melanogaster data sets:
Celniker – 1 Computational annotation data sets
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This week we’ve released 11 D. melanogaster data sets:
Celniker – 1 Computational annotation and 6 RNA sample creation and 3 RNA tiling array data sets
Karpen – 1 ChIP-chip data sets
on the following kinds of samples:

antibody: h3k27ac
cell lines: 1182-4H, CME L1, CME W1 Cl.8+, CME W2, G2, GM2, Kc167, ML-DmBG1-c1, ML-DmBG2-c2, ML-DmBG3-c2, ML-DmD11, ML-DmD16-c3, ML-DmD17-c3, ML-DmD20-c2, ML-DmD20-c5, ML-DmD21, ML-DmD23-c4, ML-DmD32, ML-DmD4-c1, ML-DmD8, ML-DmD9, S1, S2-DRSC, S2R+, S3, Sg4, mbn2
stages: adult stage, cleavage stage, dorsal closure stage, early extended germ band stage, egg stage, embryonic stage, embryonic stage 1, larval stage, late embryonic stage, third instar larval stage
strains: Oregon-R-modENCODE, y; cn bw sp
tissues: antenna disc-derived cell-line, blastoderm cell, cns-derived cell-line, dorsal mesothoracic disc, early embryonic cell, embryo-derived cell-line, embryonic/larval hemocyte, eye-antenna disc-derived cell-line, gastrula cell, imaginal disc-derived cell-line, ventral prothoracic disc, whole organism
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This week we’ve released 4 D. melanogaster data sets:
Celniker – 2 Computational annotation and 1 RTPCR data sets
Henikoff – 1 RNA tiling array data sets

on the following kinds of samples:
cell lines: CME L1, S2
stages: late embryonic stage, third instar larval stage
tissues: embryo-derived cell-line, ventral prothoracic disc

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This week we’ve released 10 D. melanogaster data sets:
Celniker – 3 Computational annotation and 4 RNA tiling array data sets
Lai – 3 RNA-seq data sets
on the following kinds of samples:

stages: adult stage, embryonic stage, embryonic stage 11, embryonic stage 12, embryonic stage 17, late extended germ band stage, third instar larval stage
strains: Canton-S, y; cn bw sp
tissues: abdomen, adult head, thorax, whole organism
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