modMine provides RESTful web services enabling execution of queries directly from programs you write. All Template Queries can very easily be executed from the command line or a script, click the ‘Embed’ link on a Template Query form for more details.
We also provide a Perl client API that makes it easy to run templates and create custom queries from simple Perl programs. The download contains some sample code that will connect to modMine and run queries to, for example, fetch details of antibodies and to find modENCODE features located near to gene(s) of interest.
You can download the package at:
http://www.flymine.org/download/modmine/perlAPI
Instructions are in the file http://www.flymine.org/download/modmine/perlAPI/howToInstall
Or for an automated install, which will handle dependencies for you can use pip:
From the commandline run:
pip http://www.flymine.org/download/modmine/perlAPI/InterMine-0.02.tar.gz
Don’t forget you can install pip (the package installer for Perl) with “cpan pip”
modMine release 17
This release represents the data release freeze of 1st of February 2010.
Release 17 contains 1031 submissions, 729 for fly and 302 for worm. 2 of the fly submissions relate to Drosophila Pseudoscura.
There are 37 experiments in the release, and more than 43 millions of genetic features.
New documentation on the use of modMine is now available from the drop down menu of our blog.
Under the tag modMine you can find a general overview followed by an introductory video and a general help page with more detailed subsections devoted to the analysis of fly and worm data.
modMine release 14
New full release with 588 submissions.
This release contains a snapshot of all fly data for analysis (data analysis freeze).
New front page with simplified layout and improved overview of experiments.
New experiment pages, with summary of experimental factors and access to related features, GBrowse tracks, submissions, submitted files.
New release of InterMine, the powerful open source data warehouse system at the core of modMine. Please see the release notes.