modENCODE Blog

modMine release 28

Release 28 consists of 1835 submissions, organised in 72 experiments divided in 12 categories.

It features an improved overlapping feature search.

This week we’ve released 11 D. melanogaster data sets:
Celniker – 1 Computational annotation and 6 RNA sample creation and 3 RNA tiling array data sets
Karpen – 1 ChIP-chip data sets
on the following kinds of samples:

antibody: h3k27ac
cell lines: 1182-4H, CME L1, CME W1 Cl.8+, CME W2, G2, GM2, Kc167, ML-DmBG1-c1, ML-DmBG2-c2, ML-DmBG3-c2, ML-DmD11, ML-DmD16-c3, ML-DmD17-c3, ML-DmD20-c2, ML-DmD20-c5, ML-DmD21, ML-DmD23-c4, ML-DmD32, ML-DmD4-c1, ML-DmD8, ML-DmD9, S1, S2-DRSC, S2R+, S3, Sg4, mbn2
stages: adult stage, cleavage stage, dorsal closure stage, early extended germ band stage, egg stage, embryonic stage, embryonic stage 1, larval stage, late embryonic stage, third instar larval stage
strains: Oregon-R-modENCODE, y; cn bw sp
tissues: antenna disc-derived cell-line, blastoderm cell, cns-derived cell-line, dorsal mesothoracic disc, early embryonic cell, embryo-derived cell-line, embryonic/larval hemocyte, eye-antenna disc-derived cell-line, gastrula cell, imaginal disc-derived cell-line, ventral prothoracic disc, whole organism
Read more…

This week we’ve released 8 D. melanogaster data sets:
Karpen – 1 ChIP-chip data sets
Lai – 4 RNA-seq data sets
White – 3 ChIP-chip data sets
on the following kinds of samples:

antibodies: h3k27me3, h4actetra
cell line: S2-DRSC
stages: adult stage, embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 15, embryonic stage 16, embryonic stage 2, embryonic stage 9, late embryonic stage
strains: Canton-S, y; cn bw sp
tissues: adult head, embryo-derived cell-line, whole organism
Read more…