modENCODE Blog

This week we’ve released 21 D. melanogaster data sets:
Lai – 1 RNA-seq (small RNAs) data sets
White – 20 ChIP-chip data sets
on the following kinds of samples:
antibodies: h3k27me3, h3k4me1, h3k4me3, h3k9ac, h3k9me3, no antibody control
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 15, embryonic stage 16, embryonic stage 17, embryonic stage 9, first instar larval stage, second instar larval stage
strains: Canton-S, y; cn bw sp
tissues: adult head, whole organism
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This week we’ve released 6 D. melanogaster data sets:
Lai – 1 RNA-seq data sets
MacAlpine – 5 ChIP-chip data sets
on the following kinds of samples:

antibodies: drosophila orc2p, mcm2-7 complex
cell lines: Kc167, ML-DmBG3-c2, S2-DRSC
stages: first instar larval stage, late embryonic stage, third instar larval stage
strain: Canton-S
tissues: cns-derived cell-line, embryo-derived cell-line, whole organism

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This week we’ve released 3 D. melanogaster data sets:
Henikoff – 1 RNA tiling array data sets
Lai – 2 RNA-seq data sets
on the following kinds of samples:

cell lines: S2, S2-DRSC
stages: adult stage, late embryonic stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, imaginal disc, thorax, whole organism

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This week we’ve released 3 D. melanogaster data sets:
Lai – 3 RNA-seq data sets
on the following kinds of samples:
cell lines: Kc167, S2-DRSC
stages: embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 2, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage
strains: Canton-S, Oregon-R-modENCODE
tissues: embryo-derived cell-line, whole organism
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This week we’ve released 8 D. melanogaster data sets:
Karpen – 1 ChIP-chip data sets
Lai – 4 RNA-seq data sets
White – 3 ChIP-chip data sets
on the following kinds of samples:

antibodies: h3k27me3, h4actetra
cell line: S2-DRSC
stages: adult stage, embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 15, embryonic stage 16, embryonic stage 2, embryonic stage 9, late embryonic stage
strains: Canton-S, y; cn bw sp
tissues: adult head, embryo-derived cell-line, whole organism
Read more…

This week we’ve released 6 D. melanogaster data sets:
Lai – 6 RNA-seq data sets
on the following kinds of samples:
cell line: Kc167
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage, pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, thorax, whole organism
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This week we’ve released 2 D. melanogaster data sets:
Celniker – 1 RTPCR data sets
Lai – 1 (small RNA) RNA-seq data sets
on the following kinds of samples:

cell line: CME L1
stages: pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage
strain: Canton-S
tissues: ventral prothoracic disc, whole organism

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This week we’ve released 1 D. melanogaster data sets:
Lai – 1 RNA-seq data sets
on the following kinds of samples:

cell line: S2-DRSC
stage: late embryonic stage
strain: Oregon-R-modENCODE
tissue: embryo-derived cell-line
Read more…

This week we’ve released 10 D. melanogaster data sets:
Celniker – 3 Computational annotation and 4 RNA tiling array data sets
Lai – 3 RNA-seq data sets
on the following kinds of samples:

stages: adult stage, embryonic stage, embryonic stage 11, embryonic stage 12, embryonic stage 17, late extended germ band stage, third instar larval stage
strains: Canton-S, y; cn bw sp
tissues: abdomen, adult head, thorax, whole organism
Read more…