modENCODE Blog » Lai

D. melanogaster Data Release Report for 7/27-8/2, 2009

nicole — Mon, 03 Aug 2009 20:58:52 +0000

This week we’ve released 21 D. melanogaster data sets:
Lai – 1 RNA-seq (small RNAs) data sets
White – 20 ChIP-chip data sets
on the following kinds of samples:
antibodies: h3k27me3, h3k4me1, h3k4me3, h3k9ac, h3k9me3, no antibody control
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 15, embryonic stage 16, embryonic stage 17, embryonic stage 9, first instar larval stage, second instar larval stage
strains: Canton-S, y; cn bw sp
tissues: adult head, whole organism

Here’s the breakdown by project:

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq (small RNAs)	Tissues: whole organism, adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs captured, single read alignments, repeat regions not masked (some sequences align to more than 1 genomic location)

White Project

Data Type	Experiment type	Details	Links	Comments
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K27me3, No Antibody Control Embargoed until 9 months from 2009-03-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K27me3, No Antibody Control Embargoed until 9 months from 2009-03-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K9me3, No Antibody Control Embargoed until 9 months from 2009-03-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: second instar larval stage Antibodies: H3K9me3, No Antibody Control Embargoed until 9 months from 2009-03-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K27me3, No Antibody Control Embargoed until 9 months from 2009-03-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K9me3, No Antibody Control Embargoed until 9 months from 2009-03-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: second instar larval stage Antibodies: H3K9Ac, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: second instar larval stage Antibodies: H3K4me3, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K9Ac, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: first instar larval stage Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 9 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 17 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K9Ac, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K4me3, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K4me3, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), signal data (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K4me1, No Antibody Control Embargoed until 9 months from 2009-03-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

D. melanogaster Data Release Report for 6/29-7/5, 2009

nicole — Mon, 06 Jul 2009 19:21:32 +0000

This week we’ve released 6 D. melanogaster data sets:
Lai – 1 RNA-seq data sets
MacAlpine – 5 ChIP-chip data sets
on the following kinds of samples:

antibodies: drosophila orc2p, mcm2-7 complex
cell lines: Kc167, ML-DmBG3-c2, S2-DRSC
stages: first instar larval stage, late embryonic stage, third instar larval stage
strain: Canton-S
tissues: cns-derived cell-line, embryo-derived cell-line, whole organism

Here’s the breakdown by project:

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: first instar larval stage Embargoed until 9 months from 2009-07-02	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location

Data Type

Experiment type

Details

Links

Comments

alignments (SAM)

RNA-seq

Tissues: whole organism
Strains: Canton-S
Stages: first instar larval stage

Embargoed until 9 months from 2009-07-02

ChadoXML | Tracks | Stanza | Raw Data

details…
small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location

MacAlpine Project

Data Type	Experiment type	Details	Links	Comments
replication timing signal (WIG)	tiling array	Tissues: embryo-derived cell-line Lines: Kc167 Stages: late embryonic stage Embargoed until 9 months from 2009-06-30	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
replication timing signal (WIG)	tiling array	Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2009-06-30	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
replication timing signal (WIG)	tiling array	Tissues: CNS-derived cell-line Lines: ML-DmBG3-c2 Stages: third instar larval stage Embargoed until 9 months from 2009-06-30	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
replication complex binding site (GFF), replication binding signal (WIG)	ChIP-chip	Tissues: embryo-derived cell-line Lines: Kc167 Stages: late embryonic stage Antibodies: Drosophila ORC2p Embargoed until 9 months from 2009-06-30	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
replication complex binding site (GFF), replication binding signal (WIG)	ChIP-chip	Tissues: embryo-derived cell-line Lines: Kc167 Stages: late embryonic stage Antibodies: MCM2-7 complex Embargoed until 9 months from 2009-06-30	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

D. melanogaster Data Release Report for 6/15-6/21, 2009

nicole — Mon, 22 Jun 2009 19:07:23 +0000

This week we’ve released 3 D. melanogaster data sets:
Henikoff – 1 RNA tiling array data sets
Lai – 2 RNA-seq data sets
on the following kinds of samples:

cell lines: S2, S2-DRSC
stages: adult stage, late embryonic stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, imaginal disc, thorax, whole organism

Here’s the breakdown by project:

Henikoff Project

Data Type	Experiment type	Details	Links	Comments
transcriptional fragments (GFF), transcriptional signals (WIG)	RNA tiling array	Tissues: embryo-derived cell-line Lines: S2, S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2009-06-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

Data Type

Experiment type

Details

Links

Comments

transcriptional fragments (GFF), transcriptional signals (WIG)

RNA tiling array

Tissues: embryo-derived cell-line
Lines: S2, S2-DRSC

Stages: late embryonic stage

Embargoed until 9 months from 2009-06-08

ChadoXML | Tracks | Stanza | Raw Data

details…

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: whole organism, imaginal disc Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism, abdomen, thorax Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location

Data Type

Experiment type

Details

Links

Comments

alignments (SAM)

RNA-seq

Tissues: whole organism, imaginal disc
Strains: Canton-S
Stages: adult stage

Embargoed until 9 months from 2008-09-19

ChadoXML | Tracks | Stanza | Raw Data

details…

small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location

alignments (SAM)

RNA-seq

Tissues: whole organism, abdomen, thorax
Strains: Canton-S
Stages: adult stage

Embargoed until 9 months from 2008-09-19

ChadoXML | Tracks | Stanza | Raw Data

details…

small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location

D. melanogaster Data Release Report for 6/8-6/14, 2009

nicole — Sun, 14 Jun 2009 23:15:07 +0000

This week we’ve released 3 D. melanogaster data sets:
Lai – 3 RNA-seq data sets
on the following kinds of samples:
cell lines: Kc167, S2-DRSC
stages: embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 2, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage
strains: Canton-S, Oregon-R-modENCODE
tissues: embryo-derived cell-line, whole organism

Here’s the breakdown by project:

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: embryonic stage 10, embryonic stage 11, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, and 3 more… Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: embryo-derived cell-line Strains: Oregon-R-modENCODE Lines: Kc167, S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: embryonic stage 1, embryonic stage 2 Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking,some sequences align to >>1 genomic location

D. melanogaster Data Release Report for 4/6-4/12, 2009

nicole — Mon, 13 Apr 2009 17:56:16 +0000

This week we’ve released 8 D. melanogaster data sets:
Karpen – 1 ChIP-chip data sets
Lai – 4 RNA-seq data sets
White – 3 ChIP-chip data sets
on the following kinds of samples:

antibodies: h3k27me3, h4actetra
cell line: S2-DRSC
stages: adult stage, embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 15, embryonic stage 16, embryonic stage 2, embryonic stage 9, late embryonic stage
strains: Canton-S, y; cn bw sp
tissues: adult head, embryo-derived cell-line, whole organism

Here’s the breakdown by project:

Karpen Project

Data Type	Experiment type	Details	Links	Comments
chromatin binding site (GFF), chromatin binding signal (WIG)	ChIP-chip	Tissues: embryo-derived cell-line Lines: S2-DRSC Stages: late embryonic stage Antibodies: H4AcTetra Embargoed until 9 months from 2008-08-15	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

Data Type

Experiment type

Details

Links

Comments

chromatin binding site (GFF), chromatin binding signal (WIG)

ChIP-chip

Tissues: embryo-derived cell-line
Lines: S2-DRSC
Stages: late embryonic stage
Antibodies: H4AcTetra

Embargoed until 9 months from 2008-08-15

ChadoXML | Tracks | Stanza | Raw Data

details…

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: whole organism, adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-10-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
alignments (SAM)	RNA-seq	Tissues: whole organism, adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-10-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: embryonic stage 11, embryonic stage 12, embryonic stage 13 Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: embryonic stage 1, embryonic stage 2 Embargoed until 9 months from 2008-09-22	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location

White Project

Data Type	Experiment type	Details	Links	Comments
chromatin binding site (GFF), chromatin binding signal (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: adult stage Antibodies: H3K27me3 Embargoed until 9 months from 2009-03-03	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), chromatin binding signal (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 15, embryonic stage 16 Antibodies: H3K27me3 Embargoed until 9 months from 2009-03-08	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
chromatin binding site (GFF), chromatin binding signal (WIG)	ChIP-chip	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 9 Antibodies: H3K27me3 Embargoed until 9 months from 2009-02-02	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

Data Type

Experiment type

Details

Links

Comments

chromatin binding site (GFF), chromatin binding signal (WIG)

ChIP-chip

Tissues: whole organism
Strains: y; cn bw sp
Stages: adult stage
Antibodies: H3K27me3
Embargoed until 9 months from 2009-03-03

ChadoXML | Tracks | Stanza | Raw Data

details…

chromatin binding site (GFF), chromatin binding signal (WIG)

ChIP-chip

Tissues: whole organism
Strains: y; cn bw sp
Stages: embryonic stage 15, embryonic stage 16

Antibodies: H3K27me3

Embargoed until 9 months from 2009-03-08

ChadoXML | Tracks | Stanza | Raw Data

details…

chromatin binding site (GFF), chromatin binding signal (WIG)

ChIP-chip

Tissues: whole organism
Strains: y; cn bw sp
Stages: embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 9
Antibodies: H3K27me3

Embargoed until 9 months from 2009-02-02

ChadoXML | Tracks | Stanza | Raw Data

details…

D. melanogaster Data Release Report for 3/30-4/5, 2009

nicole — Mon, 06 Apr 2009 22:52:21 +0000

This week we’ve released 6 D. melanogaster data sets:
Lai – 6 RNA-seq data sets
on the following kinds of samples:
cell line: Kc167
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage, pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, thorax, whole organism

Here’s the breakdown by project:

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: embryo-derived cell-line Lines: Kc167 Stages: late embryonic stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism, abdomen, thorax Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: third instar larval stage Embargoed until 9 months from 2008-10-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: embryonic stage 10, embryonic stage 11, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, and 3 more… Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: embryonic stage 11, embryonic stage 12, embryonic stage 13 Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: pharate adult stage P10, pharate adult stage P11, pharate adult stage P12, pharate adult stage P13, pharate adult stage P14, pharate adult stage P15, and 3 more… Embargoed until 9 months from 2008-10-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location

D. melanogaster Data Release Report for 3/23-3/29, 2009

nicole — Mon, 30 Mar 2009 17:46:02 +0000

This week we’ve released 2 D. melanogaster data sets:
Celniker – 1 RTPCR data sets
Lai – 1 (small RNA) RNA-seq data sets
on the following kinds of samples:

cell line: CME L1
stages: pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage
strain: Canton-S
tissues: ventral prothoracic disc, whole organism

Here’s the breakdown by project:

Celniker Project

Data Type	Experiment type	Details	Links	Comments
trace reads, gene models, EST alignments (GFF)	RTPCR	Tissues: ventral prothoracic disc Lines: CME L1 Stages: third instar larval stage Embargoed until 9 months from 2009-02-27	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

This week we’ve released 2 D. melanogaster data sets:
Celniker – 1 RTPCR data sets
Lai – 1 RNA-seq data sets
on the following kinds of samples:

cell line: CME L1

stages: pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage

strain: Canton-S

tissues: ventral prothoracic disc, whole organism

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: pharate adult stage P10, pharate adult stage P11, pharate adult stage P12, pharate adult stage P13, pharate adult stage P14, pharate adult stage P15, and 3 more… Embargoed until 9 months from 2008-10-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location

Data Type

Experiment type

Details

Links

Comments

alignments

RNA-seq

Tissues: whole organism
Strains: Canton-S
Stages: pharate adult stage P10, pharate adult stage P11, pharate adult stage P12, pharate adult stage P13, pharate adult stage P14, pharate adult stage P15, and 3 more…

Embargoed until 9 months from 2008-10-09

ChadoXML | Tracks | Stanza | Raw Data

details…

small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location

D. melanogaster Data Release Report for 3/9-3/15, 2009

nicole — Mon, 16 Mar 2009 22:42:58 +0000

This week we’ve released 1 D. melanogaster data sets:
Lai – 1 RNA-seq data sets
on the following kinds of samples:

cell line: S2-DRSC
stage: late embryonic stage
strain: Oregon-R-modENCODE
tissue: embryo-derived cell-line

Here’s the breakdown by project:

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: embryo-derived cell-line Strains: Oregon-R-modENCODE Lines: S2-DRSC Stages: late embryonic stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location

Data Type

Experiment type

Details

Links

Comments

alignments (SAM)

RNA-seq

Tissues: embryo-derived cell-line
Strains: Oregon-R-modENCODE
Lines: S2-DRSC
Stages: late embryonic stage

Embargoed until 9 months from 2008-09-19

ChadoXML | Tracks | Stanza | Raw Data

details…

small RNAs, single read alignments, no repeat masking, sequences may align to >>1 genomic location

D. melanogaster Data Release Report for 3/2-3/8, 2009

nicole — Mon, 09 Mar 2009 17:28:30 +0000

This week we’ve released 10 D. melanogaster data sets:
Celniker – 3 Computational annotation and 4 RNA tiling array data sets
Lai – 3 RNA-seq data sets
on the following kinds of samples:

stages: adult stage, embryonic stage, embryonic stage 11, embryonic stage 12, embryonic stage 17, late extended germ band stage, third instar larval stage
strains: Canton-S, y; cn bw sp
tissues: abdomen, adult head, thorax, whole organism

Here’s the breakdown by project:

Celniker Project

Data Type	Experiment type	Details	Links	Comments
gene models (GFF)	Computational annotation	Embargoed until 9 months from 2008-03-27	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
gene models (GFF)	Computational annotation	Embargoed until 9 months from 2008-04-23	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
gene models (GFF)	Computational annotation	Embargoed until 9 months from 2008-06-26	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
transcriptional fragments (GFF), transcriptional signals (WIG)	RNA tiling array	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage Embargoed until 9 months from 2008-09-23	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
transcriptional fragments (GFF), transcriptional signals (WIG)	RNA tiling array	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage Embargoed until 9 months from 2008-09-23	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
transcriptional fragments (GFF), transcriptional signals (WIG)	RNA tiling array	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage, embryonic stage 17 Embargoed until 9 months from 2008-09-23	ChadoXML \| Tracks \| Stanza \| Raw Data	details…
transcriptional fragments (GFF), transcriptional signals (WIG)	RNA tiling array	Tissues: whole organism Strains: y; cn bw sp Stages: embryonic stage 11, embryonic stage 12, late extended germ band stage Embargoed until 9 months from 2008-09-23	ChadoXML \| Tracks \| Stanza \| Raw Data	details…

Lai Project

Data Type	Experiment type	Details	Links	Comments
alignments (SAM)	RNA-seq	Tissues: adult head Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequence may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: abdomen, thorax Strains: Canton-S Stages: adult stage Embargoed until 9 months from 2008-09-19	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequence may align to >>1 genomic location
alignments (SAM)	RNA-seq	Tissues: whole organism Strains: Canton-S Stages: third instar larval stage Embargoed until 9 months from 2008-10-09	ChadoXML \| Tracks \| Stanza \| Raw Data	details… small RNAs, single read alignments, no repeat masking, sequence may align to >>1 genomic location

Data Type

Experiment type

Details

Links

Comments

alignments (SAM)

RNA-seq

Tissues: adult head
Strains: Canton-S
Stages: adult stage

Embargoed until 9 months from 2008-09-19

ChadoXML | Tracks | Stanza | Raw Data

details…

small RNAs, single read alignments, no repeat masking, sequence may align to >>1 genomic location