modMine release 16
New incremental release with 780 submissions. 568 concern fly, 212 worm.
This release contains a snapshot of all fly and worm data for analysis (data analysis freeze). It has the same data of release 15 with the addition of 10 worm submissions (all from the Lieb project).
A bug affecting the export of data has been solved.
Nucleic Acids Res. 2009 Dec 4. [Epub ahead of print]
Ooi SL, Henikoff JG, Henikoff S.
PMID: 19966274
Curr Biol. 2009 Nov 17;19(21):1777-87. Epub 2009 Oct 22.
Ercan S, Dick LL, Lieb JD.
PMID: 19853451
This week we’ve released 24 C. elegans data sets:
Lieb – 7 ChIP-chip data sets
Waterston – 17 RNA tiling array data sets
on the following kinds of samples:
antibodies: dpy-27, no antibody control, rna polii ctd domain unphosophorylated, sdc-2, sdc-3, trimethylated lys-9 on histone h3
stages: blastula embryo, elongating embryo, embryo, enclosing embryo, fully-elongated embryo, gastrulating embryo, l1 larva, l2 larva, l3 larva, l4 larva, l4 larva male, late cleavage stage embryo, newly molted young adult hermaphrodite
strains: 11dh, CB4689, JK1107, N2, YPT41, YPT47
tissues: hermaphrodite gonad, whole organism
Read more…
This week we’ve released 2 C. elegans data sets:
Lieb – 2 ChIP-chip data sets
on the following kinds of samples:
antibodies: dpy-27, no antibody control, rna polii ctd domain unphosophorylated
stage: l4 larva
strain: N2
tissue: whole organism
Read more…
This week we’ve released 4 C. elegans data sets:
Lieb – 4 ChIP-chip data sets
on the following kinds of samples:
antibodys: dpy-27, htz-1, no antibody control, rna polii ctd domain unphosophorylated, sdc-3
stage: embryo
strain: N2
tissue: whole organism
This week we’ve released 8 C. elegans data sets:
Lieb – 3 ChIP-chip data sets
Snyder – 5 ChIP-seq data sets
on the following kinds of samples:
antibodies: ama-1, dpy-27, mab-5, pha-4, sdc-3, RNA Polymerase II
stages: embryo, l3 larva, l4 larva, l4-adult molt, newly molted young adult hermaphrodite
strains: N2, OP26, OP34, OP37
tissue: whole organism
This week we’ve released 1 C. elegans data sets:
Lieb – 1 ChIP-chip data sets
on the following kinds of samples:
antibody: no antibody control
stage: embryo
strain: SS0881
tissue: whole organism
This week we’ve released 1 C. elegans data sets:
Lieb – 1 ChIP-chip data sets
on the following kinds of samples:
antibody: sdc-2
stage: embryo
strain: N2
tissue: whole organism
Read more…
This week we’ve released 2 C. elegans data sets:
Lieb – 2 ChIP-chip data sets
on the following kinds of samples:
antibodys: dpy-26, mix-1
stage: embryo
strain: N2
tissue: whole organism
C. elegans Data Release Report for 2/2-2/8, 2009
This week we’ve released 8 C. elegans data sets:
Lieb – 8 ChIP-chip data sets
on the following kinds of samples:
antibodys: flag, hcp-3, histone h3, na, rna polymerase ii ctd repeat ysptsps, trimethylated lys-36 of histone h3, trimethylated lys-4 of histone h3, trimethylated lys-9 on histone h3
stages: embryo, l3 larva
strains: N2, SS0881
tissue: whole organism