modENCODE Blog » N2 http://blog.modencode.org weblog of the modENCODE Data Coordination Center Wed, 01 Feb 2012 16:46:47 +0000 http://wordpress.org/?v=2.8.1 en hourly 1 C. elegans Data Release Report for 2/2-2/8, 2009 http://blog.modencode.org/c-elegans-data-release-report-for-22-28-2009 http://blog.modencode.org/c-elegans-data-release-report-for-22-28-2009#comments Sun, 08 Feb 2009 23:51:32 +0000 nicole http://blog.modencode.org/?p=193 C. elegans Data Release Report for 2/2-2/8, 2009

This week we’ve released 8 C. elegans data sets:
Lieb – 8 ChIP-chip data sets
on the following kinds of samples:

antibodys: flag, hcp-3, histone h3, na, rna polymerase ii ctd repeat ysptsps, trimethylated lys-36 of histone h3, trimethylated lys-4 of histone h3, trimethylated lys-9 on histone h3

stages: embryo, l3 larva

strains: N2, SS0881

tissue: whole organism

Here’s the breakdown by project:

Lieb Project

Data Type Experiment type Details Links Comments
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: N2

Stages: L3 larva

Antibodies: Histone H3

Embargoed until 9 months from 2008-06-09

 ChadoXML | Tracks | Stanza | Raw Data details…
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: N2

Stages: embryo

Antibodies: RNA polymerase II CTD repeat YSPTSPS

Embargoed until 9 months from 2008-06-02

 ChadoXML | Tracks | Stanza | Raw Data details…
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: N2

Stages: L3 larva

Antibodies: trimethylated Lys-36 of histone H3

Embargoed until 9 months from 2008-06-09

 ChadoXML | Tracks | Stanza | Raw Data details…
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: N2

Stages: L3 larva

Antibodies: Trimethylated Lys-4 of histone H3

Embargoed until 9 months from 2008-06-09

 ChadoXML | Tracks | Stanza | Raw Data details…
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: N2

Stages: L3 larva

Antibodies: na

Embargoed until 9 months from 2008-12-02

 ChadoXML | Tracks | Stanza | Raw Data details…
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: N2

Stages: L3 larva

Antibodies: Trimethylated Lys-9 on histone H3

Embargoed until 9 months from 2008-06-09

 ChadoXML | Tracks | Stanza | Raw Data details…
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: N2

Stages: embryo

Antibodies: HCP-3

Embargoed until 9 months from 2008-06-10

 ChadoXML | Tracks | Stanza | Raw Data details…
chromatin binding site signals (WIG) and peaks (GFF) ChIP-chip Tissues: whole organism

Strains: SS0881

Stages: embryo

Antibodies: FLAG

Embargoed until 9 months from 2008-12-19

 ChadoXML | Tracks | Stanza | Raw Data details…
]]> http://blog.modencode.org/c-elegans-data-release-report-for-22-28-2009/feed 0 C. elegans Data Release Report for 1/26-2/1, 2009 http://blog.modencode.org/c-elegans-data-release-report-for-126-21-2009 http://blog.modencode.org/c-elegans-data-release-report-for-126-21-2009#comments Sun, 01 Feb 2009 23:24:01 +0000 nicole http://blog.modencode.org/?p=181 This week we’ve released 1 C. elegans data sets:
Waterston – 1 RACE data sets
on the following kinds of samples:

stages: adult, all stages, l1 larva, l2 larva, l3 larva, l4 larva
strain: N2
tissue: whole organism

Here’s the breakdown by project:

Waterston Project

Data Type Experiment type Details Links Comments
splice sites, alignments, trace reads, EST alignments RACE Tissues: whole organism
Strains: N2
Stages: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, and 3 more…Embargoed until 9 months from 2008-12-08		 ChadoXML | Tracks | Stanza | Raw Data details…
]]> http://blog.modencode.org/c-elegans-data-release-report-for-126-21-2009/feed 0 C. elegans Data Release Report for 1/19-1/25, 2009 http://blog.modencode.org/c-elegans-data-release-report-for-119-126-2009 http://blog.modencode.org/c-elegans-data-release-report-for-119-126-2009#comments Sun, 25 Jan 2009 23:10:39 +0000 nicole http://blog.modencode.org/?p=175 This week we’ve released 3 C. elegans data sets:
Waterston – 2 RACE and 1 RTPCR data sets

on the following kinds of samples:
stages: adult, all stages, l1 larva, l2 larva, l3 larva, l4 larva
strain: N2
tissue: whole organism

Here’s the breakdown by project:

Waterston Project

Data Type Experiment type Details Links Comments
splice sites, alignments, trace reads, EST alignments RACE Tissues: whole organism

Strains: N2

Stages: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, and 3 more…

Embargoed until 9 months from 2008-12-02

 ChadoXML | Tracks | Stanza | Raw Data details…
splice sites, alignments, trace reads, EST alignments RACE Tissues: whole organism

Strains: N2

Stages: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, and 3 more…

Embargoed until 9 months from 2008-12-02

 ChadoXML | Tracks | Stanza | Raw Data details…
splice sites, alignments, trace reads, EST alignments RTPCR Tissues: whole organism

Strains: N2

Stages: L1 larva, L2 larva, L3 larva, L4 larva, adult, all stages, and 3 more…

Embargoed until 9 months from 2008-12-02

 ChadoXML | Tracks | Stanza | Raw Data details…
]]> http://blog.modencode.org/c-elegans-data-release-report-for-119-126-2009/feed 0