Cheng C, Yan KK, Hwang W, Qian J, Bhardwaj N, Rozowsky J, Lu ZJ, Niu W, Alves P, Kato M, Snyder M, Gerstein M.
PLoS Computational Biology. 2011 Nov;7(11):
modMine: flexible access to modENCODE data.
Contrino S, Smith RN, Butano D, Carr A, Hu F, Lyne R, Rutherford K, Kalderimis A, Sullivan J, Carbon S, Kephart ET, Lloyd P, Stinson EO, Washington NL, Perry MD, Ruzanov P, Zha Z, Lewis SE, Stein LD, Micklem G.
Nucleic Acids Research. 2011 Nov 12
This week we’ve released 21 D. melanogaster data sets:
Lai – 1 RNA-seq (small RNAs) data sets
White – 20 ChIP-chip data sets
on the following kinds of samples:
antibodies: h3k27me3, h3k4me1, h3k4me3, h3k9ac, h3k9me3, no antibody control
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 15, embryonic stage 16, embryonic stage 17, embryonic stage 9, first instar larval stage, second instar larval stage
strains: Canton-S, y; cn bw sp
tissues: adult head, whole organism
Read more…
This week we’ve released 8 D. melanogaster data sets:
Celniker – 4 RNA-seq data sets
MacAlpine – 3 ChIP-chip and 1 RNA tiling array data sets
on the following kinds of samples:
cell lines: CME W1 Cl.8+, Kc167, ML-DmBG3-c2, S2-DRSC
stages: adult stage, cleavage stage, early extended germ band stage, embryonic stage, embryonic stage 1, embryonic stage 2, embryonic stage 3, late embryonic stage, third instar larval stage
strain: y; cn bw sp
tissues: cns-derived cell-line, dorsal mesothoracic disc, embryo-derived cell-line, larval salivary gland, whole organism
Read more…
This week we’ve released 2 D. melanogaster data sets:
Celniker – 1 RNA-seq data sets
White – 1 ChIP-chip data sets
on the following kinds of samples:
antibodies: h3k9me3, no antibody control
cell line: Kc167
stages: late embryonic stage, third instar larval stage
strain: y; cn bw sp
tissues: embryo-derived cell-line, whole organism
Read more…
This week we’ve released 6 D. melanogaster data sets:
Lai – 1 RNA-seq data sets
MacAlpine – 5 ChIP-chip data sets
on the following kinds of samples:
antibodies: drosophila orc2p, mcm2-7 complex
cell lines: Kc167, ML-DmBG3-c2, S2-DRSC
stages: first instar larval stage, late embryonic stage, third instar larval stage
strain: Canton-S
tissues: cns-derived cell-line, embryo-derived cell-line, whole organism
Read more…
Categories: Fly Data Release Tags: cell line, ChIP-chip, developmental stage, drosophila, Lai, MacAlpine, replication complex binding sites, replication timing, RNA-Seq, small RNAs, tiling array
This week we’ve released 7 C. elegans data sets:
Waterston – 7 RNA-seq data sets
on the following kinds of samples:
stages: adult male, embryo, l1 larva, l2 larva, l3 larva, l4 larva, newly molted young adult hermaphrodite
strains: CB4689, N2
tissue: whole organism
Read more…
This week we’ve released 3 D. melanogaster data sets:
Henikoff – 1 RNA tiling array data sets
Lai – 2 RNA-seq data sets
on the following kinds of samples:
cell lines: S2, S2-DRSC
stages: adult stage, late embryonic stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, imaginal disc, thorax, whole organism
Read more…
This week we’ve released 3 D. melanogaster data sets:
Lai – 3 RNA-seq data sets
on the following kinds of samples:
cell lines: Kc167, S2-DRSC
stages: embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 2, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage
strains: Canton-S, Oregon-R-modENCODE
tissues: embryo-derived cell-line, whole organism
Read more…
This week we’ve released 8 D. melanogaster data sets:
Karpen – 1 ChIP-chip data sets
Lai – 4 RNA-seq data sets
White – 3 ChIP-chip data sets
on the following kinds of samples:
antibodies: h3k27me3, h4actetra
cell line: S2-DRSC
stages: adult stage, embryonic stage 1, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 15, embryonic stage 16, embryonic stage 2, embryonic stage 9, late embryonic stage
strains: Canton-S, y; cn bw sp
tissues: adult head, embryo-derived cell-line, whole organism
Read more…
Categories: Fly Data Release Tags: cell line, ChIP-chip, chromatin binding sites, developmental stage, drosophila, Karpen, Lai, RNA-Seq, small RNAs, tissue, White
This week we’ve released 6 D. melanogaster data sets:
Lai – 6 RNA-seq data sets
on the following kinds of samples:
cell line: Kc167
stages: adult stage, embryonic stage 10, embryonic stage 11, embryonic stage 12, embryonic stage 13, embryonic stage 4, embryonic stage 5, embryonic stage 6, embryonic stage 7, late embryonic stage, pharate adult stage p10, pharate adult stage p11, pharate adult stage p12, pharate adult stage p13, pharate adult stage p14, pharate adult stage p15, third instar larval stage
strain: Canton-S
tissues: abdomen, embryo-derived cell-line, thorax, whole organism
Read more…